There is an option whether to contain genotype information on samples for each position or not. It contains meta-information lines, a header line, and then data lines each containing information about a position in the genome. VCF is a text file format (most likely stored in a compressed manner). Please see VCF_4.0_sv for the conventions and extensions adopted by the 1000 Genomes Project for encoding structural variations in VCF 4.0 format. Details of the current version can be found with the HTS specifications. The VCF specification is now maintained by GA4GH. Please cite the VarAFT paper JP Desvignes & al Nucleic Acids Research, gky471, as well as ANNOVAR (PMID:20601685), UMD-Predictor (PMID: 26842889) and HSF (PMID: 19339519) papers if you used them in your research papersīy clicking on the download button you accept this licence.Please note that this page describes version 4.0 of the VCF specification. For more information on how to obtain a commercial license please contact liability for software usage is assumed. You are required to purchase a license to UMD-Predictor and HSF from GENOMNIS.For more information on how to obtain a commercial license please go to. You are required to purchase a license to ANNOVAR from BIOBASE.For more information on how to obtain a commercial license please go to For VarAFT please contact You are required to purchase a license for KEGG.VarAFT is freely available for academic and non-profit use only. The rights to adapt, translate, arrange, correct and, more generally, modify the VarAFT Software are exclusively reserved, at any time and in any place, to AMU and the developers. You shall not duplicate or transfer the VarAFT Software, in whole or in part, in whatever media or manner (electronic format, handwriting process or other), including but not limited to, through copies, downloads, research systems or information storage, for any purpose, without AMU's prior written approval.
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